PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G083900.1
Common NameB456_010G083900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 423aa    MW: 48074.1 Da    PI: 10.1974
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G083900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08261303754
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         + ErrRR++ N+ f  Lr+llP       +K +Ka+iL    +Y+ sL
  Gorai.010G083900.1 261 MSERRRREKQNEDFIALRSLLPFG-----TKKDKASILFNSRQYLTSL 303
                         67********************97.....7**************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.249254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-14256322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-12260320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-6261303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
SIGCSYICLW SYSSYLNPPN SLVPGFAFAN SLPYIELREL DLQNRWSNQT QRQFYQRAVF  60
MGCRSGEIEL GLSNVVQLNM EIEKTRFFPE DFPRQLSHVG DPFPQPTDLN RPSSFSSSLR  120
SLSTGSPIEP TPSSLQPMSS SIDCSCQQAM QALTQMQSNI QLPMLERENA SITRAILAVL  180
TSSTSHLPRQ NQNLPYNYLL NPKATALKRY VPRSTPPVRA SLRSQSILKR ATLFCRKLTL  240
VRRGELVLSR HPTSNQLHRM MSERRRREKQ NEDFIALRSL LPFGTKKDKA SILFNSRQYL  300
TSLKAQVAEL SKQNQLLQAR LLPAAADVGG SSNESLNVRI IPLHESTSEQ RMVDLRISVR  360
GEVLIDNILM RLLEFLRHDR NVSIMSIEAN NQLSEGSVNY INLRLRIEIL EFKLNVQFQM  420
SN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262267ERRRRE
2263268RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012810.11e-153Basic helix-loop-helix DNA-binding family protein, putative
TrEMBLA0A0D2V7D70.0A0A0D2V7D7_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-46bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]